Scan the store until you find an instrument that appeals to you. Make sure you are given a good stool, and a pick (although I suggest you bring one you're comfortable with). If you're playing an electric guitar, make sure you're plugged into an amp similar to the one you plan to use. If you've only got a small practice amp at home, don't allow the guitar to be plugged into a Marshall half-stack through a rack of pedals.
The first few times I tried out a guitar in a music store, I remember playing very quietly so no one would hear that I wasn't very good. A perfectly natural instinct, but in retrospect I've realized it was the silliest thing I could have done. In order to really hear the tonal qualities of a guitar (either electric or acoustic), it needs to be played at a reasonable volume. Do not be afraid to strum the open strings hard - listening to the guitar's sustain, and keeping an ear open for problems like buzzing strings. If you're having a hard time hearing (due to other guitarists in the store, etc.), ask to play the guitar in a separate room, or in a quieter part of the store. It should be noted I've been in music stores where owners glared at me for turning up the guitar a little, or strumming an acoustic vigorously. My solution to the problem - I hand them the guitar, say thanks, and take my business to a store that allows me to find out what the guitar sounds like before I buy it. I urge you to do the same... these people are obviously not very familiar with the way guitars work, thus not the best stores to deal with anyway.
I've had students come to me, and ask me to teach them "something cool to play in music stores". Wrong approach. When demo-ing a guitar, you should be playing things you're comfortable playing, and concentrating on the guitar, NOT on who is listening to you. Try playing each fret on the neck, slowly, making sure there are no fret buzzes. Be sure to check the guitar's intonation. If playing an electric guitar, try all of the different pick-up combinations, and listen for unwanted pick-up noise. There are many more issues to consider when examining a guitar - you'll want to study how to buy an acoustic guitaror how to buy an electric guitar.
Spend time trying many guitars in the store. Ask questions, and make notes on every guitar you play. Write down the manufacturer of the guitar, the model number, and the price. Ask what type of wood the guitar is made of. Note any special likes or dislikes you have about each guitar. When you feel like you can't stand to be in the store another minute, thank the salesperson, and head for home.
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